Jay T. Flatley
Analyst · JPMorgan
Thanks, Marc. We are very pleased with our Q1 results, particularly given the potential distraction of the Roche tender offer. I would like to thank our shareholders for their continuing strong support and reaffirm our commitment to generation of shareholder value. The positive trends we saw in Q4 continued in the first quarter as both microarray and sequencing revenue grew sequentially, and we grew EPS both sequentially and year-over-year. Overall, we feel the current global funding environment is stable. We're seeing more traditional buying patterns in the U.S., Europe is growing and Asia is particularly strong, with Japan exhibiting a funding and business resurgence. As we look toward the potential U.S. funding issues in the second half of the year, we remain cautious. While there's no clarity on sequestration and the NIH budget for 2013 remains uncertain, we continue to expect that a dramatic 8% reduction is an unlikely scenario. We've considered the range of potential budget outcomes in formulating our annual guidance, and we believe the overall funding dynamics this year are considerably more favorable than last year. To remind you, last year the uncertainty in academic spending was broader geographically and potentially affected both fiscal year 2012 and 2013, while we believe U.S. researchers currently anticipate funding uncertainty over only a 3- or 4-month period until a budget deal can be reached after the U.S. elections. Our top U.S. Genome Centers are not facing additional budget cuts as they did in Q3 last year and given that they're at the beginning of their 4-year budget cycle, we do not expect these customers to be appreciably impacted in the back half. Additionally, a new large Genome Center is expected to start taking shipments later this year. And finally some customers, in order to avoid a recent sequencing consumable price increase, have placed orders for consumables to be shipped throughout the year, improving our forecasting and allowing greater manufacturing efficiency. With our growing backlog, improved forecast visibility and fewer funding dynamics at play, we believe that we're in a considerably more favorable position this year relative to last. Let me turn now to the specific results of the quarter. Q1 was another great quarter for orders with a book-to-bill ratio of approximately 1.1 and all regions exceeding their order forecast. From a shipment perspective, all 3 geographic regions were up sequentially with the strongest growth in Asia-Pac, up more than 20%. For the first time in our history, Asia finished with higher revenue than Europe with notable strength in Japan. We had record sequencing orders driven by MiSeq, core consumables and sample prep. In the array business, total microarray revenue was down slightly year-over-year, primarily as a result of lower instrumentation shipment. This quarter marked the highest number of Infinium samples we have ever shipped. We received orders for approximately 300,000 more exome samples, bringing total samples order to date to approximately 1.3 million, by far the highest number of samples for any content collection in the company's history. In addition, Q1 marked record samples ordered for our Infinium CytoSNP array and record shipments of our methylation arrays. Turning to our sequencing business, total sequencing revenue in Q1 grew double digits sequentially, attributable to growing sequencing consumables and a significant number of MiSeq shipments. Total sequencing consumable revenue grew 20% compared to Q1 of last year. Both HiSeq and GA consumable shipments and average pull-through increased sequentially. Given our installed base, sequencing consumable shipments have now become the largest source of sequencing revenue for the company. TruSeq sample prep shipments were at a record level and grew 17% sequentially and 35% over the prior year, demonstrating our focus on back integrating in the sample prep. Average annualized consumable utilization of HiSeqs increased to $299,000 in Q1 from $273,000 in Q4, and we have several reasons to believe this trend can continue. We will be benefiting from a nominal price increase in early Q2. HiSeq utilization trends in the U.S. and Asia Pacific are positive. Sequencing consumable orders grew 33% sequentially over Q4, which itself was a record quarter, and our TruSeq Exome Enrichment pricing will continue to improve utilization. Earlier this year, we announced the HiSeq 2500 and 1500 multimode instruments. In rapid mode, the HiSeq 2500 is capable of running a genome in a day, up to 20 exomes in a day or up to 30 RNA-Seq samples in 5 hours. We've been pleased with the orders received to date, both for upgrades of existing HiSeqs and orders for the new instrument. We remain on track for launch in the second half of 2012. We're also very pleased with the market penetration of MiSeq in its second full quarter of shipments. Customer feedback continues to be very positive as this instrument fits nicely into academic research labs as well as diagnostic applied, commercial and clinical settings. We believe we achieved leading market share in the desktop sequencing market in Q1. In addition, we have seen no material impact from recent competitive announcements. We remain on track to ship the upgraded version of MiSeq this summer, with both higher and lower throughput kits. This new version of MiSeq can achieve up to 7G per run and is ideally suited for running deep coverage targeted cancer panels such as the recently announced TruSeq Amplicon - Cancer Panel, a highly multiplex product allowing accurate sequencing of hundreds of the most relevant cancer loci even in difficult samples such as formalin-fixed, paraffin-embedded tumors. With the ability to detect mutations below 5% frequency, the TruSeq Amplicon assay provides the market highest-quality data across many samples all in one experiment. We began active discussions with approximately 100 clinical customers interested in using MiSeq for diagnostic applications. Greater than half the orders for MiSeq are now from nonacademics, unlike HiSeq which is predominantly ordered by academic customers. Finally, we remain on track to submit the MiSeq platform to the FDA for 510(k) approval before year end. In our FastTrack Services business, we are pleased The Broad Institute joined the Illumina Genome Network to offer us proprietary sample prep process for challenging low input and FFPE samples. Starting this quarter, IGN will begin to offer several premium service products using the fast turnaround capability of the HiSeq 2500, coupled with enhanced sample prep and new informatics software. IGN has also launched the new Cancer Analysis Service, which leverages the high accuracy of Illumina technologies to provide cancer researchers with the most accurate data while using the lowest sample input of any commercial whole-genome sequencing service. This new service uses a new variant color, which after mapping the tumor in normal sample to the references, uniquely combines the data sets to better model somatic variants even with varying levels of tumor purity. IGN's combined calling method recovers 97% of known single nucleotide variants compared to 77% in competing services. In addition to our Cancer Analysis Services, we're working with leading data analysis and visualization companies including Diagnomics, Ingenuity and Knome to provide optimized software tools for downstream filtering and interrogation of IGN data sets with a goal of delivering biologically relevant and actionable results. These data sets can also be integrated with the results of follow-on sequencing, genotyping and RNA-Seq studies performed to help researchers better understand cancer and the associated biological pathways. We believe clinical sequencing is nearing an inflection point. Accordingly, we've been working diligently to accelerate and automate the complete end-to-end workflow required for clinical customers. In sample prep new methods like FFPE, low input and our PCR-free protocols increase the breadth of sequence of old sample types and the quality of resulting data. To accelerate analysis, we've developed a new software liner called iSelect which offers a 4x to 6x speed increase while reducing the compute requirements from a Linux cluster to a single server. At the same time, we've nearly completed an annotation project which aggregates information for multiple public databases like dbSNP, Ensembl and others that offer a simple push-button analysis for variant detection and efficient clinical interpretation. Combining this with the HiSeq 2500 yields a full workflow allowing clinical genomes to be prepped, sequenced and interpreted in less than 3 days. In the coming weeks, we're going to have some very exciting announcements about BaseSpace, Illumina's cloud computing environment. Currently, BaseSpace is supporting a significant part of our growing MiSeq installed base and as previously announced, we're working to integrate HiSeq into BaseSpace by late summer. This will allow researchers to quickly and cost effectively analyze the human genome, ultimately increasing HiSeq sales and growing the BaseSpace community. And finally, I'm excited to announce today the availability of our My Genome iPad application in the Apple App Store at a price point of $0.99. This version of the app allows consumers to explore a demo human genome, learn about possible health implications and view reports about important genetic variants. We will shortly release a version that links to our website, allowing customers to download and view their own genome once they have been sequenced via Illumina's position-mediated individual genome sequencing service. In conclusion, we're very excited about our product lineup for 2012. We had a strong Q1 and good visibility into the second half of the year given our backlog and product pipeline. We have a focus on strong operational execution and continuous innovation to maintain our technology lead. The clinical market is emerging very rapidly and will be a key story for 2012, and we continue to believe that the overall sequencing market has enormous potential and that we have the technology, people and infrastructure to capitalize on these unique opportunities and to continue to lead this market. Thank you for your time, and we'll now open the lines for questions.